ApprovalStatus

CaCORE::CaMOD::ApprovalStatus - Perl extension for ApprovalStatus.

Abstract

The CaCORE::CaMOD::ApprovalStatus is a Perl object representation of the caBIO ApprovalStatus object.

Description

Attributes of ApprovalStatus

The following are all the attributes of the ApprovalStatus object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of ApprovalStatus

The following are all the objects that are associated with the ApprovalStatus:

  End Associations and related methods


Availability

CaCORE::CaMOD::Availability - Perl extension for Availability.

Abstract

The CaCORE::CaMOD::Availability is a Perl object representation of the caBIO Availability object.

Description

Dates on which a animal model record was entered, modified or release to the intended viewing audience.

Attributes of Availability

The following are all the attributes of the Availability object and their data types:

enteredDate

data type: dateTime

visibleTo

data type: string

id

data type: long

releaseDate

data type: dateTime

modifiedDate

data type: dateTime

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Availability

The following are all the objects that are associated with the Availability:

  End Associations and related methods


AbstractCancerModel

CaCORE::CaMOD::AbstractCancerModel - Perl extension for AbstractCancerModel.

Abstract

The CaCORE::CaMOD::AbstractCancerModel is a Perl object representation of the caBIO AbstractCancerModel object.

Description

Attributes of AbstractCancerModel

The following are all the attributes of the AbstractCancerModel object and their data types:

experimentDesign

data type: string

modelDescriptor

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of AbstractCancerModel

The following are all the objects that are associated with the AbstractCancerModel:

ApprovalStatus:

Many to one assoication, use getApprovalStatus to get the associated ApprovalStatus.

Availability:

Many to one assoication, use getAvailability to get the associated Availability.

PartyRole:

One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.

Publication:

One to many assoication, use getPublicationCollection to get a collection of associated Publication.

  End Associations and related methods


TumorCode

CaCORE::CaMOD::TumorCode - Perl extension for TumorCode.

Abstract

The CaCORE::CaMOD::TumorCode is a Perl object representation of the caBIO TumorCode object.

Description

A tumor code captures the tumor type and origin species used for a drug screen test.

Attributes of TumorCode

The following are all the attributes of the TumorCode object and their data types:

code

data type: string

description

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of TumorCode

The following are all the objects that are associated with the TumorCode:

  End Associations and related methods


Xenograft

CaCORE::CaMOD::Xenograft - Perl extension for Xenograft.

Abstract

The CaCORE::CaMOD::Xenograft is a Perl object representation of the caBIO Xenograft object.

Description

This object describes to xenografts (implanting tissue or cell lines from a different species) and allografts (implanting tissue or cell lines form the same species). The grafts are transplanted in immuno-compromised animals where they grow and, depending on the graft material, form tumors.

Attributes of Xenograft

The following are all the attributes of the Xenograft object and their data types:

geneticManipulation

data type: string

administrativeSite

data type: string

type

data type: string

parentalCellLineName

data type: string

modificationDescription

data type: string

name

data type: string

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Xenograft

The following are all the objects that are associated with the Xenograft:

InvivoResult:

One to many assoication, use getInvivoResultCollection to get a collection of associated InvivoResult.

TumorCode:

Many to one assoication, use getTumorCode to get the associated TumorCode.

OriginTaxon:

Many to one assoication, use getOriginTaxon to get the associated OriginTaxon.

HostTaxon:

Many to one assoication, use getHostTaxon to get the associated HostTaxon.

  End Associations and related methods


TreatmentSchedule

CaCORE::CaMOD::TreatmentSchedule - Perl extension for TreatmentSchedule.

Abstract

The CaCORE::CaMOD::TreatmentSchedule is a Perl object representation of the caBIO TreatmentSchedule object.

Description

Treatment schedule for the pre-clinical trial / therapeutic experiment describing the dosages of the drug and the times of the treatment.

Attributes of TreatmentSchedule

The following are all the attributes of the TreatmentSchedule object and their data types:

regimen

data type: string

dosage

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of TreatmentSchedule

The following are all the objects that are associated with the TreatmentSchedule:

  End Associations and related methods


Nomenclature

CaCORE::CaMOD::Nomenclature - Perl extension for Nomenclature.

Abstract

The CaCORE::CaMOD::Nomenclature is a Perl object representation of the caBIO Nomenclature object.

Description

Official nomenclature name for mouse and rat models.

Attributes of Nomenclature

The following are all the attributes of the Nomenclature object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Nomenclature

The following are all the objects that are associated with the Nomenclature:

  End Associations and related methods


GenotypeSummary

CaCORE::CaMOD::GenotypeSummary - Perl extension for GenotypeSummary.

Abstract

The CaCORE::CaMOD::GenotypeSummary is a Perl object representation of the caBIO GenotypeSummary object.

Description

Listing of the genetic changes made deliberately in order to generate the animal model.

Attributes of GenotypeSummary

The following are all the attributes of the GenotypeSummary object and their data types:

summary

data type: string

genotype

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of GenotypeSummary

The following are all the objects that are associated with the GenotypeSummary:

Nomenclature:

Many to one assoication, use getNomenclature to get the associated Nomenclature.

  End Associations and related methods


Conditionality

CaCORE::CaMOD::Conditionality - Perl extension for Conditionality.

Abstract

The CaCORE::CaMOD::Conditionality is a Perl object representation of the caBIO Conditionality object.

Description

Indicates if a transgene or targeted modification is done conditionally (time or tissue specific).

Attributes of Conditionality

The following are all the attributes of the Conditionality object and their data types:

description

data type: string

conditionedBy

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Conditionality

The following are all the objects that are associated with the Conditionality:

  End Associations and related methods


Image

CaCORE::CaMOD::Image - Perl extension for Image.

Abstract

The CaCORE::CaMOD::Image is a Perl object representation of the caBIO Image object.

Description

Images related to the animal model e.g. histology images, blots, and graphics.

Attributes of Image

The following are all the attributes of the Image object and their data types:

description

data type: string

title

data type: string

id

data type: long

staining

data type: string

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Image

The following are all the objects that are associated with the Image:

Availability:

Many to one assoication, use getAvailability to get the associated Availability.

  End Associations and related methods


EngineeredGene

CaCORE::CaMOD::EngineeredGene - Perl extension for EngineeredGene.

Abstract

The CaCORE::CaMOD::EngineeredGene is a Perl object representation of the caBIO EngineeredGene object.

Description

Manipulated Gene introduced in the animal model.

Attributes of EngineeredGene

The following are all the attributes of the EngineeredGene object and their data types:

cabioId

data type: long

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of EngineeredGene

The following are all the objects that are associated with the EngineeredGene:

Gene:

One to many assoication, use getGeneCollection to get a collection of associated Gene.

DatabaseCrossReference:

One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference.

GenotypeSummary:

Many to one assoication, use getGenotypeSummary to get the associated GenotypeSummary.

ExpressionFeature:

One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature.

Conditionality:

Many to one assoication, use getConditionality to get the associated Conditionality.

Image:

Many to one assoication, use getImage to get the associated Image.

  End Associations and related methods


IntegrationType

CaCORE::CaMOD::IntegrationType - Perl extension for IntegrationType.

Abstract

The CaCORE::CaMOD::IntegrationType is a Perl object representation of the caBIO IntegrationType object.

Description

Location of the integration of the engineered gene e.g. random or targeted.

Attributes of IntegrationType

The following are all the attributes of the IntegrationType object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of IntegrationType

The following are all the objects that are associated with the IntegrationType:

GenomicSegment:

One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment.

Transgene:

One to many assoication, use getTransgeneCollection to get a collection of associated Transgene.

  End Associations and related methods


Transgene

CaCORE::CaMOD::Transgene - Perl extension for Transgene.

Abstract

The CaCORE::CaMOD::Transgene is a Perl object representation of the caBIO Transgene object.

Description

A transgene is an engineered gene consisting at least of a regulatory element and a coding sequence; regulatory element and coding sequence can come from different species.

Attributes of Transgene

The following are all the attributes of the Transgene object and their data types:

locationOfIntegration

data type: string

engineeredGeneId

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Transgene

The following are all the objects that are associated with the Transgene:

RegulatoryElement:

One to many assoication, use getRegulatoryElementCollection to get a collection of associated RegulatoryElement.

IntegrationType:

Many to one assoication, use getIntegrationType to get the associated IntegrationType.

  End Associations and related methods


Therapy

CaCORE::CaMOD::Therapy - Perl extension for Therapy.

Abstract

The CaCORE::CaMOD::Therapy is a Perl object representation of the caBIO Therapy object.

Description

Pre-clinical trials experiment conducted on the animal model with the goal to reduce cancer burden.

Attributes of Therapy

The following are all the attributes of the Therapy object and their data types:

experiment

data type: string

comments

data type: string

id

data type: long

results

data type: string

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Therapy

The following are all the objects that are associated with the Therapy:

TreatmentSchedule:

Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.

Agent:

Many to one assoication, use getAgent to get the associated Agent.

Publication:

One to many assoication, use getPublicationCollection to get a collection of associated Publication.

  End Associations and related methods


YeastModel

CaCORE::CaMOD::YeastModel - Perl extension for YeastModel.

Abstract

The CaCORE::CaMOD::YeastModel is a Perl object representation of the caBIO YeastModel object.

Description

A yeast model captures the yeast strains altered in the NCI Yeast Anticancer Drug Screen.

Attributes of YeastModel

The following are all the attributes of the YeastModel object and their data types:

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of YeastModel

The following are all the objects that are associated with the YeastModel:

TargetedModification:

One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.

ScreeningResult:

One to many assoication, use getScreeningResultCollection to get a collection of associated ScreeningResult.

  End Associations and related methods


TargetedModification

CaCORE::CaMOD::TargetedModification - Perl extension for TargetedModification.

Abstract

The CaCORE::CaMOD::TargetedModification is a Perl object representation of the caBIO TargetedModification object.

Description

Modification targeted to a specific gene or a specific part of the gene to either suppress the function of the gene or insert marker sequences like loxP sites.

Attributes of TargetedModification

The following are all the attributes of the TargetedModification object and their data types:

esCellLineName

data type: string

blastocystName

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of TargetedModification

The following are all the objects that are associated with the TargetedModification:

ModificationType:

One to many assoication, use getModificationTypeCollection to get a collection of associated ModificationType.

YeastModel:

Many to one assoication, use getYeastModel to get the associated YeastModel.

EngineeredGene:

Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.

  End Associations and related methods


SexDistribution

CaCORE::CaMOD::SexDistribution - Perl extension for SexDistribution.

Abstract

The CaCORE::CaMOD::SexDistribution is a Perl object representation of the caBIO SexDistribution object.

Description

Object indicated if the phenotype was observed in both sexes or only in one.

Attributes of SexDistribution

The following are all the attributes of the SexDistribution object and their data types:

type

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of SexDistribution

The following are all the objects that are associated with the SexDistribution:

  End Associations and related methods


SegmentType

CaCORE::CaMOD::SegmentType - Perl extension for SegmentType.

Abstract

The CaCORE::CaMOD::SegmentType is a Perl object representation of the caBIO SegmentType object.

Description

specifies the type of library that the genomic segment was retrieved from such as BAC or YAC.

Attributes of SegmentType

The following are all the attributes of the SegmentType object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of SegmentType

The following are all the objects that are associated with the SegmentType:

  End Associations and related methods


Role

CaCORE::CaMOD::Role - Perl extension for Role.

Abstract

The CaCORE::CaMOD::Role is a Perl object representation of the caBIO Role object.

Description

Role that a person or organization plays e.g. public user, reviewer.

Attributes of Role

The following are all the attributes of the Role object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Role

The following are all the objects that are associated with the Role:

PartyRole:

One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.

  End Associations and related methods


RepositoryInfo

CaCORE::CaMOD::RepositoryInfo - Perl extension for RepositoryInfo.

Abstract

The CaCORE::CaMOD::RepositoryInfo is a Perl object representation of the caBIO RepositoryInfo object.

Description

Some animal models are distributed by the MMHCC mouse repository. Object contains information about the availability of a particular model from the repository. A submitter of data to the cancer models database can also indicate if their model should be submitted to the repository.

Attributes of RepositoryInfo

The following are all the attributes of the RepositoryInfo object and their data types:

inTheRepository

data type: long

sentEmailContent

data type: string

id

data type: long

suggestSubmission

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of RepositoryInfo

The following are all the objects that are associated with the RepositoryInfo:

  End Associations and related methods


RegulatoryElementType

CaCORE::CaMOD::RegulatoryElementType - Perl extension for RegulatoryElementType.

Abstract

The CaCORE::CaMOD::RegulatoryElementType is a Perl object representation of the caBIO RegulatoryElementType object.

Description

Type of the regulatory element e.g. promoter, polyA signal.

Attributes of RegulatoryElementType

The following are all the attributes of the RegulatoryElementType object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of RegulatoryElementType

The following are all the objects that are associated with the RegulatoryElementType:

  End Associations and related methods


RegulatoryElement

CaCORE::CaMOD::RegulatoryElement - Perl extension for RegulatoryElement.

Abstract

The CaCORE::CaMOD::RegulatoryElement is a Perl object representation of the caBIO RegulatoryElement object.

Description

A regulatory element controls the expression of a gene and/or and engineered gene.

Attributes of RegulatoryElement

The following are all the attributes of the RegulatoryElement object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of RegulatoryElement

The following are all the objects that are associated with the RegulatoryElement:

Promoter:

One to many assoication, use getPromoterCollection to get a collection of associated Promoter.

Taxon:

Many to one assoication, use getTaxon to get the associated Taxon.

RegulatoryElementType:

Many to one assoication, use getRegulatoryElementType to get the associated RegulatoryElementType.

  End Associations and related methods


PublicationStatus

CaCORE::CaMOD::PublicationStatus - Perl extension for PublicationStatus.

Abstract

The CaCORE::CaMOD::PublicationStatus is a Perl object representation of the caBIO PublicationStatus object.

Description

Status of the publication e.g. published, submitted.

Attributes of PublicationStatus

The following are all the attributes of the PublicationStatus object and their data types:

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of PublicationStatus

The following are all the objects that are associated with the PublicationStatus:

  End Associations and related methods


Publication

CaCORE::CaMOD::Publication - Perl extension for Publication.

Abstract

The CaCORE::CaMOD::Publication is a Perl object representation of the caBIO Publication object.

Description

Publications describing the animal model itself or experiments in which the animal model was used.

Attributes of Publication

The following are all the attributes of the Publication object and their data types:

volume

data type: string

endPage

data type: long

year

data type: long

title

data type: string

pmid

data type: long

startPage

data type: long

journal

data type: string

authors

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Publication

The following are all the objects that are associated with the Publication:

PublicationStatus:

Many to one assoication, use getPublicationStatus to get the associated PublicationStatus.

  End Associations and related methods


Promoter

CaCORE::CaMOD::Promoter - Perl extension for Promoter.

Abstract

The CaCORE::CaMOD::Promoter is a Perl object representation of the caBIO Promoter object.

Description

Promoter is a subcategory of the regulatory element.

Attributes of Promoter

The following are all the attributes of the Promoter object and their data types:

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Promoter

The following are all the objects that are associated with the Promoter:

Gene:

Many to one assoication, use getGene to get the associated Gene.

RegulatoryElement:

Many to one assoication, use getRegulatoryElement to get the associated RegulatoryElement.

  End Associations and related methods


Phenotype

CaCORE::CaMOD::Phenotype - Perl extension for Phenotype.

Abstract

The CaCORE::CaMOD::Phenotype is a Perl object representation of the caBIO Phenotype object.

Description

Phenotype displayed by the animal model such as neoplastic lesions, other diseases, behavioral problem.

Attributes of Phenotype

The following are all the attributes of the Phenotype object and their data types:

description

data type: string

breedingNotes

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Phenotype

The following are all the objects that are associated with the Phenotype:

SexDistribution:

Many to one assoication, use getSexDistribution to get the associated SexDistribution.

  End Associations and related methods


Party

CaCORE::CaMOD::Party - Perl extension for Party.

Abstract

The CaCORE::CaMOD::Party is a Perl object representation of the caBIO Party object.

Description

Entity that has access to the data, either a person or an organization.

Attributes of Party

The following are all the attributes of the Party object and their data types:

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Party

The following are all the objects that are associated with the Party:

PartyRole:

One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.

ContactInfo:

One to many assoication, use getContactInfoCollection to get a collection of associated ContactInfo.

  End Associations and related methods


Person

CaCORE::CaMOD::Person - Perl extension for Person.

Abstract

The CaCORE::CaMOD::Person is a Perl object representation of the caBIO Person object.

Description

Person's first and last name and the connection to the party.

Attributes of Person

The following are all the attributes of the Person object and their data types:

partyId

data type: long

firstName

data type: string

lastName

data type: string

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Person

The following are all the objects that are associated with the Person:

  End Associations and related methods


PartyRole

CaCORE::CaMOD::PartyRole - Perl extension for PartyRole.

Abstract

The CaCORE::CaMOD::PartyRole is a Perl object representation of the caBIO PartyRole object.

Description

Object connects the party (organization or person) with the animal model.

Attributes of PartyRole

The following are all the attributes of the PartyRole object and their data types:

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of PartyRole

The following are all the objects that are associated with the PartyRole:

Role:

Many to one assoication, use getRole to get the associated Role.

AnimalModel:

One to many assoication, use getAnimalModelCollection to get a collection of associated AnimalModel.

Party:

Many to one assoication, use getParty to get the associated Party.

  End Associations and related methods


Organization

CaCORE::CaMOD::Organization - Perl extension for Organization.

Abstract

The CaCORE::CaMOD::Organization is a Perl object representation of the caBIO Organization object.

Description

Organizational unit like a laboratory, institute or consortium.

Attributes of Organization

The following are all the attributes of the Organization object and their data types:

partyId

data type: long

name

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of Organization

The following are all the objects that are associated with the Organization:

  End Associations and related methods


MicroArrayData

CaCORE::CaMOD::MicroArrayData - Perl extension for MicroArrayData.

Abstract

The CaCORE::CaMOD::MicroArrayData is a Perl object representation of the caBIO MicroArrayData object.

Description

Data of microarray experiments generated from the animal model.

Attributes of MicroArrayData

The following are all the attributes of the MicroArrayData object and their data types:

experimentName

data type: string

id

data type: long

experimentId

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of MicroArrayData

The following are all the objects that are associated with the MicroArrayData:

Availability:

Many to one assoication, use getAvailability to get the associated Availability.

  End Associations and related methods


JaxInfo

CaCORE::CaMOD::JaxInfo - Perl extension for JaxInfo.

Abstract

The CaCORE::CaMOD::JaxInfo is a Perl object representation of the caBIO JaxInfo object.

Description

Identification number (stock number) of strain at the Jackson Laboratory, number can be used for ordering the strain; http://www.jax.org.

Attributes of JaxInfo

The following are all the attributes of the JaxInfo object and their data types:

jaxStockNo

data type: long

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of JaxInfo

The following are all the objects that are associated with the JaxInfo:

  End Associations and related methods


EnvironmentalFactor

CaCORE::CaMOD::EnvironmentalFactor - Perl extension for EnvironmentalFactor.

Abstract

The CaCORE::CaMOD::EnvironmentalFactor is a Perl object representation of the caBIO EnvironmentalFactor object.

Description

Chemical, radiation, hormone treatment or other environmental factor that initiates or supports development of neoplasias.

Attributes of EnvironmentalFactor

The following are all the attributes of the EnvironmentalFactor object and their data types:

name

data type: string

type

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of EnvironmentalFactor

The following are all the objects that are associated with the EnvironmentalFactor:

InducedMutation:

One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation.

  End Associations and related methods


InducedMutation

CaCORE::CaMOD::InducedMutation - Perl extension for InducedMutation.

Abstract

The CaCORE::CaMOD::InducedMutation is a Perl object representation of the caBIO InducedMutation object.

Description

Induced mutations are defined as mutations triggered by radiation, chemicals or other means. Progeny of the treated animal inherits the mutation.

Attributes of InducedMutation

The following are all the attributes of the InducedMutation object and their data types:

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of InducedMutation

The following are all the objects that are associated with the InducedMutation:

EnvironmentalFactor:

Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor.

EngineeredGene:

One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene.

  End Associations and related methods


GenomicSegment

CaCORE::CaMOD::GenomicSegment - Perl extension for GenomicSegment.

Abstract

The CaCORE::CaMOD::GenomicSegment is a Perl object representation of the caBIO GenomicSegment object.

Description

Genomic segment extracted from a library e.g. BAC or YAC library to be used in the genetic manipulation of the animal model.

Attributes of GenomicSegment

The following are all the attributes of the GenomicSegment object and their data types:

locationOfIntegration

data type: string

segmentSize

data type: string

id

data type: long

cloneDesignator

data type: string

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of GenomicSegment

The following are all the objects that are associated with the GenomicSegment:

SegmentType:

Many to one assoication, use getSegmentType to get the associated SegmentType.

EngineeredGene:

One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene.

  End Associations and related methods


GeneticAlteration

CaCORE::CaMOD::GeneticAlteration - Perl extension for GeneticAlteration.

Abstract

The CaCORE::CaMOD::GeneticAlteration is a Perl object representation of the caBIO GeneticAlteration object.

Description

Genetic alterations found in the neoplastic lesions of the animal model. These alterations are not made intentionally.

Attributes of GeneticAlteration

The following are all the attributes of the GeneticAlteration object and their data types:

observation

data type: string

methodOfObservation

data type: string

id

data type: long

  End Attributes
  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of GeneticAlteration

The following are all the objects that are associated with the GeneticAlteration:

  End Associations and related methods


GeneFunction

CaCORE::CaMOD::GeneFunction - Perl extension for GeneFunction.

Abstract

The CaCORE::CaMOD::GeneFunction is a Perl object representation of the caBIO GeneFunction object.

Description

Functions of the engineered genes.

Attributes of GeneFunction

The following are all the attributes of the GeneFunction object and their data types:

function

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of GeneFunction

The following are all the objects that are associated with the GeneFunction:

EngineeredGene:

Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.

  End Associations and related methods


GeneDelivery

CaCORE::CaMOD::GeneDelivery - Perl extension for GeneDelivery.

Abstract

The CaCORE::CaMOD::GeneDelivery is a Perl object representation of the caBIO GeneDelivery object.

Description

Gene is delivered to specific organs or specific receptors within the animal model. using viral vectors

Attributes of GeneDelivery

The following are all the attributes of the GeneDelivery object and their data types:

viralVector

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of GeneDelivery

The following are all the objects that are associated with the GeneDelivery:

EngineeredGene:

Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.

  End Associations and related methods


ContactInfo

CaCORE::CaMOD::ContactInfo - Perl extension for ContactInfo.

Abstract

The CaCORE::CaMOD::ContactInfo is a Perl object representation of the caBIO ContactInfo object.

Description

Information regarding the person who submitted the data.

Attributes of ContactInfo

The following are all the attributes of the ContactInfo object and their data types:

faxNumber

data type: string

zipCode

data type: string

street

data type: string

institute

data type: string

state

data type: string

email

data type: string

phoneNumber

data type: string

labName

data type: string

id

data type: long

city

data type: string

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of ContactInfo

The following are all the objects that are associated with the ContactInfo:

Party:

One to many assoication, use getPartyCollection to get a collection of associated Party.

  End Associations and related methods


CellLine

CaCORE::CaMOD::CellLine - Perl extension for CellLine.

Abstract

The CaCORE::CaMOD::CellLine is a Perl object representation of the caBIO CellLine object.

Description

Cell lines generated from the animal model.

Attributes of CellLine

The following are all the attributes of the CellLine object and their data types:

experiment

data type: string

comments

data type: string

name

data type: string

results

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of CellLine

The following are all the objects that are associated with the CellLine:

Publication:

One to many assoication, use getPublicationCollection to get a collection of associated Publication.

  End Associations and related methods


CarcinogenicIntervention

CaCORE::CaMOD::CarcinogenicIntervention - Perl extension for CarcinogenicIntervention.

Abstract

The CaCORE::CaMOD::CarcinogenicIntervention is a Perl object representation of the caBIO CarcinogenicIntervention object.

Description

Treatment or procedure that the animal model was exposed to in order to initiate or support the development of neoplastic lesions.

Attributes of CarcinogenicIntervention

The following are all the attributes of the CarcinogenicIntervention object and their data types:

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of CarcinogenicIntervention

The following are all the objects that are associated with the CarcinogenicIntervention:

EnvironmentalFactor:

Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor.

TreatmentSchedule:

Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.

  End Associations and related methods


AnimalModel

CaCORE::CaMOD::AnimalModel - Perl extension for AnimalModel.

Abstract

The CaCORE::CaMOD::AnimalModel is a Perl object representation of the caBIO AnimalModel object.

Description

An animal model which develops cancer or can be used to generate a model that develops cancer.

Attributes of AnimalModel

The following are all the attributes of the AnimalModel object and their data types:

url

data type: string

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of AnimalModel

The following are all the objects that are associated with the AnimalModel:

Phenotype:

Many to one assoication, use getPhenotype to get the associated Phenotype.

CarcinogenicIntervention:

One to many assoication, use getCarcinogenicInterventionCollection to get a collection of associated CarcinogenicIntervention.

Therapy:

One to many assoication, use getTherapyCollection to get a collection of associated Therapy.

Image:

One to many assoication, use getImageCollection to get a collection of associated Image.

Xenograft:

One to many assoication, use getXenograftCollection to get a collection of associated Xenograft.

MicroArrayData:

One to many assoication, use getMicroArrayDataCollection to get a collection of associated MicroArrayData.

TargetedModification:

One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.

GenomicSegment:

One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment.

RepositoryInfo:

Many to one assoication, use getRepositoryInfo to get the associated RepositoryInfo.

Histopathology:

One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.

CellLine:

One to many assoication, use getCellLineCollection to get a collection of associated CellLine.

Transgene:

One to many assoication, use getTransgeneCollection to get a collection of associated Transgene.

JaxInfo:

Many to one assoication, use getJaxInfo to get the associated JaxInfo.

InducedMutation:

One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation.

  End Associations and related methods


EndpointCode

CaCORE::CaMOD::EndpointCode - Perl extension for EndpointCode.

Abstract

The CaCORE::CaMOD::EndpointCode is a Perl object representation of the caBIO EndpointCode object.

Description

A endpoint code captures the parameter for measuring success of anti-drug screen test; mean tumor weightm median survival time, etc.

Attributes of EndpointCode

The following are all the attributes of the EndpointCode object and their data types:

code

data type: string

description

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of EndpointCode

The following are all the objects that are associated with the EndpointCode:

  End Associations and related methods


ScreeningResult

CaCORE::CaMOD::ScreeningResult - Perl extension for ScreeningResult.

Abstract

The CaCORE::CaMOD::ScreeningResult is a Perl object representation of the caBIO ScreeningResult object.

Description

A Screening Result captures the results of the tens of thousands of compounds screened for their ability to inhibit the growth of selected yeast strains altered in DNA damage repair or cell cycle control.

Attributes of ScreeningResult

The following are all the attributes of the ScreeningResult object and their data types:

diffinh

data type: float

aveinh

data type: float

stage

data type: string

id

data type: long

inhibitionRate

data type: float

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of ScreeningResult

The following are all the objects that are associated with the ScreeningResult:

TreatmentSchedule:

Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.

Agent:

Many to one assoication, use getAgent to get the associated Agent.

  End Associations and related methods


InvivoResult

CaCORE::CaMOD::InvivoResult - Perl extension for InvivoResult.

Abstract

The CaCORE::CaMOD::InvivoResult is a Perl object representation of the caBIO InvivoResult object.

Description

An Invivo Result captures the results of anti-tumor drug screening.

Attributes of InvivoResult

The following are all the attributes of the InvivoResult object and their data types:

toxicityEvalDay

data type: string

evaluationDay

data type: string

toxicitySurvivors

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of InvivoResult

The following are all the objects that are associated with the InvivoResult:

TreatmentSchedule:

Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.

Agent:

Many to one assoication, use getAgent to get the associated Agent.

EndpointCode:

Many to one assoication, use getEndpointCode to get the associated EndpointCode.

  End Associations and related methods


ModificationType

CaCORE::CaMOD::ModificationType - Perl extension for ModificationType.

Abstract

The CaCORE::CaMOD::ModificationType is a Perl object representation of the caBIO ModificationType object.

Description

Attributes of ModificationType

The following are all the attributes of the ModificationType object and their data types:

name

data type: string

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of ModificationType

The following are all the objects that are associated with the ModificationType:

TargetedModification:

One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.

  End Associations and related methods


ExpressionFeature

CaCORE::CaMOD::ExpressionFeature - Perl extension for ExpressionFeature.

Abstract

The CaCORE::CaMOD::ExpressionFeature is a Perl object representation of the caBIO ExpressionFeature object.

Description

The expression feature object describes expression pattern of the engineered gene in the cancer model.

Attributes of ExpressionFeature

The following are all the attributes of the ExpressionFeature object and their data types:

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of ExpressionFeature

The following are all the objects that are associated with the ExpressionFeature:

OrganOntology:

One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology.

  End Associations and related methods


CancerModel

CaCORE::CaMOD::CancerModel - Perl extension for CancerModel.

Abstract

The CaCORE::CaMOD::CancerModel is a Perl object representation of the caBIO CancerModel object.

Description

Attributes of CancerModel

The following are all the attributes of the CancerModel object and their data types:

id

data type: long

  End Attributes

  Note: Although you can also use the corresponding setter methods to set the
  attribute values, it is not recommended to do so unless you absolutely have
  to change the object's attributes.

Associations of CancerModel

The following are all the objects that are associated with the CancerModel:

  End Associations and related methods