CaCORE::CaMOD::ApprovalStatus - Perl extension for ApprovalStatus.
The CaCORE::CaMOD::ApprovalStatus is a Perl object representation of the caBIO ApprovalStatus object.
The following are all the attributes of the ApprovalStatus object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ApprovalStatus:
End Associations and related methods
CaCORE::CaMOD::Availability - Perl extension for Availability.
The CaCORE::CaMOD::Availability is a Perl object representation of the caBIO Availability object.
Dates on which a animal model record was entered, modified or release to the intended viewing audience.
The following are all the attributes of the Availability object and their data types:
enteredDate dateTime visibleTo string id long releaseDate dateTime modifiedDate dateTime End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Availability:
End Associations and related methods
CaCORE::CaMOD::AbstractCancerModel - Perl extension for AbstractCancerModel.
The CaCORE::CaMOD::AbstractCancerModel is a Perl object representation of the caBIO AbstractCancerModel object.
The following are all the attributes of the AbstractCancerModel object and their data types:
experimentDesign string modelDescriptor string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the AbstractCancerModel:
ApprovalStatus: Many to one assoication, use getApprovalStatus to get the associated ApprovalStatus. Availability: Many to one assoication, use getAvailability to get the associated Availability. PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
CaCORE::CaMOD::TumorCode - Perl extension for TumorCode.
The CaCORE::CaMOD::TumorCode is a Perl object representation of the caBIO TumorCode object.
A tumor code captures the tumor type and origin species used for a drug screen test.
The following are all the attributes of the TumorCode object and their data types:
code string description string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TumorCode:
End Associations and related methods
CaCORE::CaMOD::Xenograft - Perl extension for Xenograft.
The CaCORE::CaMOD::Xenograft is a Perl object representation of the caBIO Xenograft object.
This object describes to xenografts (implanting tissue or cell lines from a different species) and allografts (implanting tissue or cell lines form the same species). The grafts are transplanted in immuno-compromised animals where they grow and, depending on the graft material, form tumors.
The following are all the attributes of the Xenograft object and their data types:
geneticManipulation string administrativeSite string type string parentalCellLineName string modificationDescription string name string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Xenograft:
InvivoResult: One to many assoication, use getInvivoResultCollection to get a collection of associated InvivoResult. TumorCode: Many to one assoication, use getTumorCode to get the associated TumorCode. OriginTaxon: Many to one assoication, use getOriginTaxon to get the associated OriginTaxon. HostTaxon: Many to one assoication, use getHostTaxon to get the associated HostTaxon. End Associations and related methods
CaCORE::CaMOD::TreatmentSchedule - Perl extension for TreatmentSchedule.
The CaCORE::CaMOD::TreatmentSchedule is a Perl object representation of the caBIO TreatmentSchedule object.
Treatment schedule for the pre-clinical trial / therapeutic experiment describing the dosages of the drug and the times of the treatment.
The following are all the attributes of the TreatmentSchedule object and their data types:
regimen string dosage string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TreatmentSchedule:
End Associations and related methods
CaCORE::CaMOD::Nomenclature - Perl extension for Nomenclature.
The CaCORE::CaMOD::Nomenclature is a Perl object representation of the caBIO Nomenclature object.
Official nomenclature name for mouse and rat models.
The following are all the attributes of the Nomenclature object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Nomenclature:
End Associations and related methods
CaCORE::CaMOD::GenotypeSummary - Perl extension for GenotypeSummary.
The CaCORE::CaMOD::GenotypeSummary is a Perl object representation of the caBIO GenotypeSummary object.
Listing of the genetic changes made deliberately in order to generate the animal model.
The following are all the attributes of the GenotypeSummary object and their data types:
summary string genotype string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GenotypeSummary:
Nomenclature: Many to one assoication, use getNomenclature to get the associated Nomenclature. End Associations and related methods
CaCORE::CaMOD::Conditionality - Perl extension for Conditionality.
The CaCORE::CaMOD::Conditionality is a Perl object representation of the caBIO Conditionality object.
Indicates if a transgene or targeted modification is done conditionally (time or tissue specific).
The following are all the attributes of the Conditionality object and their data types:
description string conditionedBy string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Conditionality:
End Associations and related methods
CaCORE::CaMOD::Image - Perl extension for Image.
The CaCORE::CaMOD::Image is a Perl object representation of the caBIO Image object.
Images related to the animal model e.g. histology images, blots, and graphics.
The following are all the attributes of the Image object and their data types:
description string title string id long staining string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Image:
Availability: Many to one assoication, use getAvailability to get the associated Availability. End Associations and related methods
CaCORE::CaMOD::EngineeredGene - Perl extension for EngineeredGene.
The CaCORE::CaMOD::EngineeredGene is a Perl object representation of the caBIO EngineeredGene object.
Manipulated Gene introduced in the animal model.
The following are all the attributes of the EngineeredGene object and their data types:
cabioId long name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EngineeredGene:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference. GenotypeSummary: Many to one assoication, use getGenotypeSummary to get the associated GenotypeSummary. ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature. Conditionality: Many to one assoication, use getConditionality to get the associated Conditionality. Image: Many to one assoication, use getImage to get the associated Image. End Associations and related methods
CaCORE::CaMOD::IntegrationType - Perl extension for IntegrationType.
The CaCORE::CaMOD::IntegrationType is a Perl object representation of the caBIO IntegrationType object.
Location of the integration of the engineered gene e.g. random or targeted.
The following are all the attributes of the IntegrationType object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the IntegrationType:
GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment. Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene. End Associations and related methods
CaCORE::CaMOD::Transgene - Perl extension for Transgene.
The CaCORE::CaMOD::Transgene is a Perl object representation of the caBIO Transgene object.
A transgene is an engineered gene consisting at least of a regulatory element and a coding sequence; regulatory element and coding sequence can come from different species.
The following are all the attributes of the Transgene object and their data types:
locationOfIntegration string engineeredGeneId long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Transgene:
RegulatoryElement: One to many assoication, use getRegulatoryElementCollection to get a collection of associated RegulatoryElement. IntegrationType: Many to one assoication, use getIntegrationType to get the associated IntegrationType. End Associations and related methods
CaCORE::CaMOD::Therapy - Perl extension for Therapy.
The CaCORE::CaMOD::Therapy is a Perl object representation of the caBIO Therapy object.
Pre-clinical trials experiment conducted on the animal model with the goal to reduce cancer burden.
The following are all the attributes of the Therapy object and their data types:
experiment string comments string id long results string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Therapy:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
CaCORE::CaMOD::YeastModel - Perl extension for YeastModel.
The CaCORE::CaMOD::YeastModel is a Perl object representation of the caBIO YeastModel object.
A yeast model captures the yeast strains altered in the NCI Yeast Anticancer Drug Screen.
The following are all the attributes of the YeastModel object and their data types:
End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the YeastModel:
TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. ScreeningResult: One to many assoication, use getScreeningResultCollection to get a collection of associated ScreeningResult. End Associations and related methods
CaCORE::CaMOD::TargetedModification - Perl extension for TargetedModification.
The CaCORE::CaMOD::TargetedModification is a Perl object representation of the caBIO TargetedModification object.
Modification targeted to a specific gene or a specific part of the gene to either suppress the function of the gene or insert marker sequences like loxP sites.
The following are all the attributes of the TargetedModification object and their data types:
esCellLineName string blastocystName string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TargetedModification:
ModificationType: One to many assoication, use getModificationTypeCollection to get a collection of associated ModificationType. YeastModel: Many to one assoication, use getYeastModel to get the associated YeastModel. EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
CaCORE::CaMOD::SexDistribution - Perl extension for SexDistribution.
The CaCORE::CaMOD::SexDistribution is a Perl object representation of the caBIO SexDistribution object.
Object indicated if the phenotype was observed in both sexes or only in one.
The following are all the attributes of the SexDistribution object and their data types:
type string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the SexDistribution:
End Associations and related methods
CaCORE::CaMOD::SegmentType - Perl extension for SegmentType.
The CaCORE::CaMOD::SegmentType is a Perl object representation of the caBIO SegmentType object.
specifies the type of library that the genomic segment was retrieved from such as BAC or YAC.
The following are all the attributes of the SegmentType object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the SegmentType:
End Associations and related methods
CaCORE::CaMOD::Role - Perl extension for Role.
The CaCORE::CaMOD::Role is a Perl object representation of the caBIO Role object.
Role that a person or organization plays e.g. public user, reviewer.
The following are all the attributes of the Role object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Role:
PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. End Associations and related methods
CaCORE::CaMOD::RepositoryInfo - Perl extension for RepositoryInfo.
The CaCORE::CaMOD::RepositoryInfo is a Perl object representation of the caBIO RepositoryInfo object.
Some animal models are distributed by the MMHCC mouse repository. Object contains information about the availability of a particular model from the repository. A submitter of data to the cancer models database can also indicate if their model should be submitted to the repository.
The following are all the attributes of the RepositoryInfo object and their data types:
inTheRepository long sentEmailContent string id long suggestSubmission long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RepositoryInfo:
End Associations and related methods
CaCORE::CaMOD::RegulatoryElementType - Perl extension for RegulatoryElementType.
The CaCORE::CaMOD::RegulatoryElementType is a Perl object representation of the caBIO RegulatoryElementType object.
Type of the regulatory element e.g. promoter, polyA signal.
The following are all the attributes of the RegulatoryElementType object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElementType:
End Associations and related methods
CaCORE::CaMOD::RegulatoryElement - Perl extension for RegulatoryElement.
The CaCORE::CaMOD::RegulatoryElement is a Perl object representation of the caBIO RegulatoryElement object.
A regulatory element controls the expression of a gene and/or and engineered gene.
The following are all the attributes of the RegulatoryElement object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElement:
Promoter: One to many assoication, use getPromoterCollection to get a collection of associated Promoter. Taxon: Many to one assoication, use getTaxon to get the associated Taxon. RegulatoryElementType: Many to one assoication, use getRegulatoryElementType to get the associated RegulatoryElementType. End Associations and related methods
CaCORE::CaMOD::PublicationStatus - Perl extension for PublicationStatus.
The CaCORE::CaMOD::PublicationStatus is a Perl object representation of the caBIO PublicationStatus object.
Status of the publication e.g. published, submitted.
The following are all the attributes of the PublicationStatus object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the PublicationStatus:
End Associations and related methods
CaCORE::CaMOD::Publication - Perl extension for Publication.
The CaCORE::CaMOD::Publication is a Perl object representation of the caBIO Publication object.
Publications describing the animal model itself or experiments in which the animal model was used.
The following are all the attributes of the Publication object and their data types:
volume string endPage long year long title string pmid long startPage long journal string authors string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Publication:
PublicationStatus: Many to one assoication, use getPublicationStatus to get the associated PublicationStatus. End Associations and related methods
CaCORE::CaMOD::Promoter - Perl extension for Promoter.
The CaCORE::CaMOD::Promoter is a Perl object representation of the caBIO Promoter object.
Promoter is a subcategory of the regulatory element.
The following are all the attributes of the Promoter object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Promoter:
Gene: Many to one assoication, use getGene to get the associated Gene. RegulatoryElement: Many to one assoication, use getRegulatoryElement to get the associated RegulatoryElement. End Associations and related methods
CaCORE::CaMOD::Phenotype - Perl extension for Phenotype.
The CaCORE::CaMOD::Phenotype is a Perl object representation of the caBIO Phenotype object.
Phenotype displayed by the animal model such as neoplastic lesions, other diseases, behavioral problem.
The following are all the attributes of the Phenotype object and their data types:
description string breedingNotes string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Phenotype:
SexDistribution: Many to one assoication, use getSexDistribution to get the associated SexDistribution. End Associations and related methods
CaCORE::CaMOD::Party - Perl extension for Party.
The CaCORE::CaMOD::Party is a Perl object representation of the caBIO Party object.
Entity that has access to the data, either a person or an organization.
The following are all the attributes of the Party object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Party:
PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. ContactInfo: One to many assoication, use getContactInfoCollection to get a collection of associated ContactInfo. End Associations and related methods
CaCORE::CaMOD::Person - Perl extension for Person.
The CaCORE::CaMOD::Person is a Perl object representation of the caBIO Person object.
Person's first and last name and the connection to the party.
The following are all the attributes of the Person object and their data types:
partyId long firstName string lastName string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Person:
End Associations and related methods
CaCORE::CaMOD::PartyRole - Perl extension for PartyRole.
The CaCORE::CaMOD::PartyRole is a Perl object representation of the caBIO PartyRole object.
Object connects the party (organization or person) with the animal model.
The following are all the attributes of the PartyRole object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the PartyRole:
Role: Many to one assoication, use getRole to get the associated Role. AnimalModel: One to many assoication, use getAnimalModelCollection to get a collection of associated AnimalModel. Party: Many to one assoication, use getParty to get the associated Party. End Associations and related methods
CaCORE::CaMOD::Organization - Perl extension for Organization.
The CaCORE::CaMOD::Organization is a Perl object representation of the caBIO Organization object.
Organizational unit like a laboratory, institute or consortium.
The following are all the attributes of the Organization object and their data types:
partyId long name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Organization:
End Associations and related methods
CaCORE::CaMOD::MicroArrayData - Perl extension for MicroArrayData.
The CaCORE::CaMOD::MicroArrayData is a Perl object representation of the caBIO MicroArrayData object.
Data of microarray experiments generated from the animal model.
The following are all the attributes of the MicroArrayData object and their data types:
experimentName string id long experimentId long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the MicroArrayData:
Availability: Many to one assoication, use getAvailability to get the associated Availability. End Associations and related methods
CaCORE::CaMOD::JaxInfo - Perl extension for JaxInfo.
The CaCORE::CaMOD::JaxInfo is a Perl object representation of the caBIO JaxInfo object.
Identification number (stock number) of strain at the Jackson Laboratory, number can be used for ordering the strain; http://www.jax.org.
The following are all the attributes of the JaxInfo object and their data types:
jaxStockNo long id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the JaxInfo:
End Associations and related methods
CaCORE::CaMOD::EnvironmentalFactor - Perl extension for EnvironmentalFactor.
The CaCORE::CaMOD::EnvironmentalFactor is a Perl object representation of the caBIO EnvironmentalFactor object.
Chemical, radiation, hormone treatment or other environmental factor that initiates or supports development of neoplasias.
The following are all the attributes of the EnvironmentalFactor object and their data types:
name string type string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EnvironmentalFactor:
InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation. End Associations and related methods
CaCORE::CaMOD::InducedMutation - Perl extension for InducedMutation.
The CaCORE::CaMOD::InducedMutation is a Perl object representation of the caBIO InducedMutation object.
Induced mutations are defined as mutations triggered by radiation, chemicals or other means. Progeny of the treated animal inherits the mutation.
The following are all the attributes of the InducedMutation object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the InducedMutation:
EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor. EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene. End Associations and related methods
CaCORE::CaMOD::GenomicSegment - Perl extension for GenomicSegment.
The CaCORE::CaMOD::GenomicSegment is a Perl object representation of the caBIO GenomicSegment object.
Genomic segment extracted from a library e.g. BAC or YAC library to be used in the genetic manipulation of the animal model.
The following are all the attributes of the GenomicSegment object and their data types:
locationOfIntegration string segmentSize string id long cloneDesignator string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GenomicSegment:
SegmentType: Many to one assoication, use getSegmentType to get the associated SegmentType. EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene. End Associations and related methods
CaCORE::CaMOD::GeneticAlteration - Perl extension for GeneticAlteration.
The CaCORE::CaMOD::GeneticAlteration is a Perl object representation of the caBIO GeneticAlteration object.
Genetic alterations found in the neoplastic lesions of the animal model. These alterations are not made intentionally.
The following are all the attributes of the GeneticAlteration object and their data types:
observation string methodOfObservation string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneticAlteration:
End Associations and related methods
CaCORE::CaMOD::GeneFunction - Perl extension for GeneFunction.
The CaCORE::CaMOD::GeneFunction is a Perl object representation of the caBIO GeneFunction object.
Functions of the engineered genes.
The following are all the attributes of the GeneFunction object and their data types:
function string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneFunction:
EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
CaCORE::CaMOD::GeneDelivery - Perl extension for GeneDelivery.
The CaCORE::CaMOD::GeneDelivery is a Perl object representation of the caBIO GeneDelivery object.
Gene is delivered to specific organs or specific receptors within the animal model. using viral vectors
The following are all the attributes of the GeneDelivery object and their data types:
viralVector string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneDelivery:
EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
CaCORE::CaMOD::ContactInfo - Perl extension for ContactInfo.
The CaCORE::CaMOD::ContactInfo is a Perl object representation of the caBIO ContactInfo object.
Information regarding the person who submitted the data.
The following are all the attributes of the ContactInfo object and their data types:
faxNumber string zipCode string street string institute string state string email string phoneNumber string labName string id long city string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ContactInfo:
Party: One to many assoication, use getPartyCollection to get a collection of associated Party. End Associations and related methods
CaCORE::CaMOD::CellLine - Perl extension for CellLine.
The CaCORE::CaMOD::CellLine is a Perl object representation of the caBIO CellLine object.
Cell lines generated from the animal model.
The following are all the attributes of the CellLine object and their data types:
experiment string comments string name string results string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CellLine:
Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
CaCORE::CaMOD::CarcinogenicIntervention - Perl extension for CarcinogenicIntervention.
The CaCORE::CaMOD::CarcinogenicIntervention is a Perl object representation of the caBIO CarcinogenicIntervention object.
Treatment or procedure that the animal model was exposed to in order to initiate or support the development of neoplastic lesions.
The following are all the attributes of the CarcinogenicIntervention object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CarcinogenicIntervention:
EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor. TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. End Associations and related methods
CaCORE::CaMOD::AnimalModel - Perl extension for AnimalModel.
The CaCORE::CaMOD::AnimalModel is a Perl object representation of the caBIO AnimalModel object.
An animal model which develops cancer or can be used to generate a model that develops cancer.
The following are all the attributes of the AnimalModel object and their data types:
url string End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the AnimalModel:
Phenotype: Many to one assoication, use getPhenotype to get the associated Phenotype. CarcinogenicIntervention: One to many assoication, use getCarcinogenicInterventionCollection to get a collection of associated CarcinogenicIntervention. Therapy: One to many assoication, use getTherapyCollection to get a collection of associated Therapy. Image: One to many assoication, use getImageCollection to get a collection of associated Image. Xenograft: One to many assoication, use getXenograftCollection to get a collection of associated Xenograft. MicroArrayData: One to many assoication, use getMicroArrayDataCollection to get a collection of associated MicroArrayData. TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment. RepositoryInfo: Many to one assoication, use getRepositoryInfo to get the associated RepositoryInfo. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. CellLine: One to many assoication, use getCellLineCollection to get a collection of associated CellLine. Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene. JaxInfo: Many to one assoication, use getJaxInfo to get the associated JaxInfo. InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation. End Associations and related methods
CaCORE::CaMOD::EndpointCode - Perl extension for EndpointCode.
The CaCORE::CaMOD::EndpointCode is a Perl object representation of the caBIO EndpointCode object.
A endpoint code captures the parameter for measuring success of anti-drug screen test; mean tumor weightm median survival time, etc.
The following are all the attributes of the EndpointCode object and their data types:
code string description string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EndpointCode:
End Associations and related methods
CaCORE::CaMOD::ScreeningResult - Perl extension for ScreeningResult.
The CaCORE::CaMOD::ScreeningResult is a Perl object representation of the caBIO ScreeningResult object.
A Screening Result captures the results of the tens of thousands of compounds screened for their ability to inhibit the growth of selected yeast strains altered in DNA damage repair or cell cycle control.
The following are all the attributes of the ScreeningResult object and their data types:
diffinh float aveinh float stage string id long inhibitionRate float End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ScreeningResult:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. End Associations and related methods
CaCORE::CaMOD::InvivoResult - Perl extension for InvivoResult.
The CaCORE::CaMOD::InvivoResult is a Perl object representation of the caBIO InvivoResult object.
An Invivo Result captures the results of anti-tumor drug screening.
The following are all the attributes of the InvivoResult object and their data types:
toxicityEvalDay string evaluationDay string toxicitySurvivors string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the InvivoResult:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. EndpointCode: Many to one assoication, use getEndpointCode to get the associated EndpointCode. End Associations and related methods
CaCORE::CaMOD::ModificationType - Perl extension for ModificationType.
The CaCORE::CaMOD::ModificationType is a Perl object representation of the caBIO ModificationType object.
The following are all the attributes of the ModificationType object and their data types:
name string id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ModificationType:
TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. End Associations and related methods
CaCORE::CaMOD::ExpressionFeature - Perl extension for ExpressionFeature.
The CaCORE::CaMOD::ExpressionFeature is a Perl object representation of the caBIO ExpressionFeature object.
The expression feature object describes expression pattern of the engineered gene in the cancer model.
The following are all the attributes of the ExpressionFeature object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ExpressionFeature:
OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology. End Associations and related methods
CaCORE::CaMOD::CancerModel - Perl extension for CancerModel.
The CaCORE::CaMOD::CancerModel is a Perl object representation of the caBIO CancerModel object.
The following are all the attributes of the CancerModel object and their data types:
id long End Attributes
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CancerModel:
End Associations and related methods